species:   Scscl
pid:       PID1721
parent:    Ssc-milR-197
paralog:   
locus:     NW_001820833.1:2369601-2369692
matures:   ['UUCCGGGAGUUUGACCAUUCU', 'GAUGGAGGGGAUUCCAGUUGGGGUG']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820833.1:2369601-2369692

0 out of bounds
0 alignments
0 proper strand
0 stranded perfect matches

        ***********************                             ***************************     
GAGGUGUAGAUUCCGGGAGUUUGACCAUUCUACAAAGGGUUCGGCUAGCGUUGAAGGGGAUGGAUGGAGGGGAUUCCAGUUGGGGUGGUGGA
.........(((((((((((((..((((((.........((((((....))))))......))))))...)))))))...))))))......
----------UUCCGGGAGUUUGACCAUUCU------------------------------------------------------------- l=21 a=0 c
--------------------------------------------------------------GAUGGAGGGGAUUCCAGUUGGGGUG----- l=25 a=0 c*
----------UUCCGGGAGUUUGACCAUUCU------------------------------------------------------------- l=21 a=0 ma
--------------------------------------------------------------GAUGGAGGGGAUUCCAGUUGGGGUG----- l=25 a=0 ma*


No alignments to locus

mb-01011
ax-1011011
ku-01
ss-000110001000
fn-001
